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A brief tour of R/qtl
https://rqtl.org/rqtltour.pdf
A brief tour of R/qtl Karl W Broman Department of Biostatistics and Medical Informatics University of Wisconsin – Madison https://rqtl.org 21 March 2012 Overview of R/qtl R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTL) in experimental crosses. It is imple-
A shorter tour of R/qtl
https://rqtl.org/rqtltour2.pdf
A shorter tour of R/qtl Karl W Broman Department of Biostatistics and Medical Informatics University of Wisconsin – Madison https://rqtl.org 26 November 2012 Preliminaries 1. To install R/qtl, type (within R) install.packages("qtl")(This needs to be done just once.) 2. To load the R/qtl package, type library(qtl) This needs to be done every ...
R/qtl
https://rqtl.org/tutorials/rqtltour2.R
##### # R code for "A shorter tour of R/qtl" # # Karl W Broman, [email protected] # University of Wisconsin Madison # # https://rqtl.org # # 26 November 2012 ...
QTL Analysis in R R-bloggers
https://www.r-bloggers.com/qtl-analysis-in-r/
Aug 13, 2011 · See also: Part 1: QTL Analysis and Quantitative Genetics Part 2: Statistical Methods for QTL Analysis The 'qtl' package in R allows you to implement QTL analysis using the methods I've previously discussed. The code below is adapted from Broman...
R/qtl2 user guide - Karl Broman
https://kbroman.org/qtl2/assets/vignettes/user_guide.html
R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software R/qtl, to better handle high-dimensional data and complex cross designs.. The software was previously split into multiple packages (qtl2geno, qtl2scan, qtl2plot, and qtl2db), but as of version 0.7, these have been combined into a single package qtl2.The multiple packages proved awkward and confusing.
R/qtl tutorial
https://www.biostat.wisc.edu/~kbroman/teaching/misc/Hyderabad/rqtltour3.pdf
2. To load the R/qtl package, type library(qtl) This needs to be done every time you start R. (There is a way to have the package loaded automatically every time, but we won’t discuss that here.) 3. To view the objects in your workspace: ls() 4. To get information on a function or data set in R (and in R/qtl) use the function help(), or the ...
A Guide to QTL Mapping with R/qtl SpringerLink
https://link.springer.com/book/10.1007%2F978-0-387-92125-9
R/qtl is an extensible, interactive environment for QTL mapping in experimental crosses. It is implemented as a package for the widely used open source statistical software R and contains a diverse array of QTL mapping methods, diagnostic tools for ensuring high-quality data, and facilities for the fit and exploration of multiple-QTL models ...
Econometric Sense: QTL Analysis in R
https://econometricsense.blogspot.com/2011/08/qtl-analysis-in-r.html
Aug 13, 2011 · See also: Part 1: QTL Analysis and Quantitative Genetics Part 2: Statistical Methods for QTL Analysis The 'qtl' package in R allows you to implement QTL analysis using the methods I've previously discussed. The code below is adapted from Broman's documentation "A Brief Tour of R/qtl."
Package ‘qtl’ - R/qtl software for mapping ...
https://rqtl.org/manual/qtl-manual.pdf
A brief introduction to the R/qtl package, with a walk-through of an analysis. New to R and/or R/qtl? •In order to use the R/qtl package, you must type (within R) library(qtl). You may wish to include this in a .Rprofile file. •Documention and several tutorials are available at the R archive (https://cran.r-project.
Tutorial - Multiple-QTL Mapping (MQM) Analysis for R/qtl
https://rqtl.org/tutorials/MQM-tour.pdf
data and has higher power to detect QTL (linked and unlinked) than other methods. R/qtl’s MQM is faster than other implementations and scales on multi-CPU systems and computer clusters. In this tutorial we will show you how to use MQM for QTL mapping. MQM is an integral part of the free R/qtl package [2, 1, 3] for the R statistical language2.
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