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A shorter tour of R/qtl
https://rqtl.org/rqtltour2.pdf
A shorter tour of R/qtl Karl W Broman Department of Biostatistics and Medical Informatics University of Wisconsin – Madison https://rqtl.org 26 November 2012 Preliminaries 1. To install R/qtl, type (within R) install.packages("qtl")(This needs to be done just once.) 2. To load the R/qtl package, type library(qtl) This needs to be done every ...
A brief tour of R/qtl
https://rqtl.org/rqtltour.pdf
A brief tour of R/qtl Karl W Broman Department of Biostatistics and Medical Informatics University of Wisconsin – Madison https://rqtl.org 21 March 2012 Overview of R/qtl R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTL) in experimental crosses. It is imple-
CiteSeerX — A shorter tour of R/qtl
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.378.7863
CiteSeerX - Document Details (Isaac Councill, Lee Giles, Pradeep Teregowda): 2. To load the R/qtl package, type library(qtl) This needs to be done every time you start R. (There is a way to have the package loaded automatically every time, but we won’t discuss that here.) 3. To view the objects in your workspace: ls() 4. The best way to get help on the functions and data sets in R (and in R ...
A shorter tour of R/qtl - Biostatistics and Medical ...
https://www.biostat.wisc.edu/~kbroman/teaching/misc/Jax/2011/rqtltour2.pdf
4. The best way to get help on the functions and data sets in R (and in R/qtl) is via the html version of the help files. One way to get access to this is to type help.start() This should open a browser with the main help menu. If you then click on Packages →qtl, you can see all of the available functions and datasets in R/qtl.
A shorter tour of R/qtl - CORE
https://core.ac.uk/display/23457211
A shorter tour of R/qtl . By Karl W Broman. Abstract. 2. To load the R/qtl package, type library(qtl) This needs to be done every time you start R. (There is a way to have the package loaded automatically every time, but we won’t discuss that here.) 3. To view the objects in your workspace: ls() 4. The best way to get help on the functions ...Author: Karl W Broman
# ERRORs: "Loading required package: sp" "there is no ...
https://github.com/kbroman/RqtlWorkshop/issues/1
Jun 10, 2017 · But neither the sp package nor INLA are required by R/qtl, and so it's not clear what relationship that has to this R/qtl workshop repository. Copy link Quote reply mohammed-abdulrahman commented Dec 23, 2018 •
QTL Analysis in R R-bloggers
https://www.r-bloggers.com/qtl-analysis-in-r/
Aug 13, 2011 · See also: Part 1: QTL Analysis and Quantitative Genetics Part 2: Statistical Methods for QTL Analysis The 'qtl' package in R allows you to implement QTL analysis using the methods I've previously discussed. The code below is adapted from Broman...
A Guide to QTL Mapping with R/qtl SpringerLink
https://link.springer.com/book/10.1007%2F978-0-387-92125-9
R/qtl is an extensible, interactive environment for QTL mapping in experimental crosses. It is implemented as a package for the widely used open source statistical software R and contains a diverse array of QTL mapping methods, diagnostic tools for ensuring high-quality data, and facilities for the fit and exploration of multiple-QTL models ...
R/qtl tutorial
https://www.biostat.wisc.edu/~kbroman/teaching/misc/Hyderabad/rqtltour3.pdf
2. To load the R/qtl package, type library(qtl) This needs to be done every time you start R. (There is a way to have the package loaded automatically every time, but we won’t discuss that here.) 3. To view the objects in your workspace: ls() 4. To get information on a function or data set in R (and in R/qtl) use the function help(), or the ...
R/qtl2 user guide - Karl Broman
https://kbroman.org/qtl2/assets/vignettes/user_guide.html
R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software R/qtl, to better handle high-dimensional data and complex cross designs.. The software was previously split into multiple packages (qtl2geno, qtl2scan, qtl2plot, and qtl2db), but as of version 0.7, these have been combined into a single package qtl2.The multiple packages proved awkward and confusing.
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